STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
dapESuccinyldiaminopimelate desuccinylase; Catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelic acid (SDAP), forming succinate and LL-2,6-diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls; Belongs to the peptidase M20A family. DapE subfamily. (389 aa)    
Predicted Functional Partners:
Aave_2485
Succinyldiaminopimelate aminotransferase apoenzyme; PFAM: aminotransferase, class I and II; KEGG: pol:Bpro_1997 aminotransferase, class I and II.
    
 0.953
dapF
Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan.
    
 0.937
argD
KEGG: pol:Bpro_3572 acetylornithine and succinylornithine aminotransferase; TIGRFAM: acetylornithine and succinylornithine aminotransferase; PFAM: aminotransferase class-III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily.
  
 
 0.920
Aave_1109
TIGRFAM: acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase; PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: pol:Bpro_1422 acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase.
  
  
0.917
Aave_2481
[LSU ribosomal protein L3P]-glutamine N5-methyltransferase; KEGG: rfr:Rfer_2043 modification methylase, HemK family; TIGRFAM: modification methylase, HemK family; PFAM: methyltransferase small; Belongs to the protein N5-glutamine methyltransferase family.
 
  
 0.914
Aave_1106
KEGG: pol:Bpro_1422 acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase.
     
 0.908
dapD
KEGG: rfr:Rfer_2046 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase; TIGRFAM: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase; PFAM: transferase hexapeptide repeat containing protein; Belongs to the transferase hexapeptide repeat family.
 
  
 0.804
Aave_2483
TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; KEGG: pol:Bpro_1995 twitching motility protein.
       0.676
Aave_2480
PFAM: ABC transporter-related protein; SMART: AAA ATPase; KEGG: pol:Bpro_1992 ABC transporter-related protein.
   
   0.667
Aave_4394
PFAM: flagellar motor switch protein FliG; KEGG: rfr:Rfer_0551 flagellar motor switch protein FliG.
   
   0.589
Your Current Organism:
Acidovorax citrulli
NCBI taxonomy Id: 397945
Other names: A. citrulli AAC00-1, Acidovorax avenae subsp. citrulli AAC00-1, Acidovorax citrulli AAC00-1, Acidovorax citrulli str. AAC00-1, Acidovorax citrulli strain AAC00-1
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