Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Aave_2565PFAM: Biopolymer transport protein ExbD/TolR; KEGG: pol:Bpro_2948 biopolymer transport protein ExbD/TolR. (141 aa)    
Predicted Functional Partners:
Aave_2566
PFAM: MotA/TolQ/ExbB proton channel; KEGG: rfr:Rfer_3153 MotA/TolQ/ExbB proton channel.
 
 
 0.989
lpxK
lipid-A-disaccharide kinase; Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1-P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA).
 
    0.880
tolQ
Cell division and transport-associated protein TolQ; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
 
 
 0.836
kdsB
3-deoxy-D-manno-octulosonate cytidylyltransferase; Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria.
 
   
 0.812
Aave_0842
TIGRFAM: TonB family protein; KEGG: pol:Bpro_1088 TonB-like.
 
 
 0.811
Aave_2563
PFAM: protein of unknown function DUF343; KEGG: pol:Bpro_2950 protein of unknown function DUF343; Belongs to the UPF0434 family.
       0.772
Aave_4552
PFAM: MotA/TolQ/ExbB proton channel; KEGG: pol:Bpro_4607 MotA/TolQ/ExbB proton channel.
 
 
 0.752
Aave_3312
Outer membrane transport energization protein ExbB; PFAM: MotA/TolQ/ExbB proton channel; KEGG: pol:Bpro_3052 MotA/TolQ/ExbB proton channel; TC 2.C.1.1.1.
  
 
 0.672
Aave_2225
Cell division and transport-associated protein TolA; TIGRFAM: TonB family protein; PFAM: TolA family protein; KEGG: rfr:Rfer_1159 TonB-like; TC 2.C.1.2.1.
  
 
 0.631
Aave_3311
Outer membrane transport energization protein TonB; TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: pol:Bpro_3051 TonB-like; TC 2.C.1.1.1.
  
 
 0.631
Your Current Organism:
Acidovorax citrulli
NCBI taxonomy Id: 397945
Other names: A. citrulli AAC00-1, Acidovorax avenae subsp. citrulli AAC00-1, Acidovorax citrulli AAC00-1, Acidovorax citrulli str. AAC00-1, Acidovorax citrulli strain AAC00-1
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