Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Aave_2741Hypothetical protein. (130 aa)    
Predicted Functional Partners:
Aave_2740
TIGRFAM: YD repeat protein; PFAM: YD repeat-containing protein; KEGG: bxe:Bxe_A4426 rhs family protein.
       0.773
Aave_2742
KEGG: atc:AGR_L_2371 hypothetical protein.
       0.620
Aave_2739
KEGG: mxa:MXAN_1306 hypothetical protein.
       0.613
Aave_2737
Hypothetical protein.
       0.585
Aave_2738
KEGG: gsu:GSU3186 hypothetical protein.
       0.585
Aave_2735
PFAM: Rhs element Vgr protein; KEGG: bps:BPSS2093 hypothetical protein.
       0.534
Aave_2736
Hypothetical protein.
       0.534
Aave_2743
KEGG: pol:Bpro_4984 hypothetical protein.
       0.410
Your Current Organism:
Acidovorax citrulli
NCBI taxonomy Id: 397945
Other names: A. citrulli AAC00-1, Acidovorax avenae subsp. citrulli AAC00-1, Acidovorax citrulli AAC00-1, Acidovorax citrulli str. AAC00-1, Acidovorax citrulli strain AAC00-1
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