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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Aave_2811PFAM: protein of unknown function DUF214; KEGG: pol:Bpro_1679 protein of unknown function DUF214. (422 aa)    
Predicted Functional Partners:
Aave_2812
PFAM: ABC transporter-related protein; SMART: AAA ATPase; KEGG: pol:Bpro_1678 ABC transporter-related protein.
 
 
 0.961
Aave_2809
KEGG: pol:Bpro_1681 hypothetical protein.
 
  
 0.896
Aave_2813
PFAM: transcriptional regulator PadR family protein; KEGG: rfr:Rfer_2054 putative ferric uptake regulator, FUR family.
  
  
 0.800
Aave_1293
PFAM: ABC transporter-related protein; SMART: AAA ATPase; KEGG: pol:Bpro_3214 ABC transporter-related protein.
  
 
 0.703
lolD
Lipoprotein releasing system, ATP-binding protein; Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner.
  
 
 0.701
Aave_4324
PFAM: ABC transporter-related protein; SMART: AAA ATPase; KEGG: ccr:CC2091 ABC transporter, ATP-binding protein.
  
 
 0.691
msrA
Peptide methionine sulfoxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.
     
 0.653
Aave_4325
PFAM: secretion protein HlyD family protein; KEGG: ccr:CC2092 HlyD family secretion protein.
  
  
 0.646
Aave_2810
KEGG: pol:Bpro_1680 hypothetical protein.
       0.629
Aave_4663
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: rfr:Rfer_4105 secretion protein HlyD; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.559
Your Current Organism:
Acidovorax citrulli
NCBI taxonomy Id: 397945
Other names: A. citrulli AAC00-1, Acidovorax avenae subsp. citrulli AAC00-1, Acidovorax citrulli AAC00-1, Acidovorax citrulli str. AAC00-1, Acidovorax citrulli strain AAC00-1
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