STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Aave_2861KEGG: pol:Bpro_2100 hypothetical protein. (142 aa)    
Predicted Functional Partners:
Aave_0862
KEGG: rfr:Rfer_3349 histone protein.
  
     0.681
Aave_3553
KEGG: rfr:Rfer_2661 putative transmembrane protein.
  
     0.662
Aave_4589
PFAM: major facilitator superfamily MFS_1; KEGG: bxe:Bxe_A4072 major facilitator superfamily (MFS) transporter.
  
     0.656
Aave_1190
PFAM: Anti sigma-E protein RseA family protein; KEGG: rfr:Rfer_1737 anti sigma-E protein, RseA, Burkholderiaceae specific.
  
     0.632
Aave_4756
MlrC domain protein; Involved in peptidolytic degradation of cyclic heptapeptide hepatotoxin microcystin (MC); Belongs to the peptidase M81 family.
  
     0.595
Aave_2862
PFAM: protein of unknown function DUF6, transmembrane; Protein of unknown function DUF250; KEGG: pol:Bpro_2099 protein of unknown function DUF6, transmembrane.
       0.564
Aave_4750
KEGG: bxe:Bxe_B2566 ABC branched chain amino acid family transporter, periplasmic ligand binding protein; TC 3.A.1.4.-.
  
     0.558
Aave_0177
PFAM: protein of unknown function DUF861, cupin_3; Cupin 2, conserved barrel domain protein; KEGG: rme:Rmet_4456 cupin 2, conserved barrel.
  
     0.536
Aave_3551
Tfp pilus assembly protein tip-associated adhesin PilY1-like protein; KEGG: rfr:Rfer_2663 putative type-4 fimbrial biogenesis PilY1-related signal peptide protein.
  
     0.491
Aave_0412
KEGG: reu:Reut_A0848 probable transmembrane protein.
 
     0.489
Your Current Organism:
Acidovorax citrulli
NCBI taxonomy Id: 397945
Other names: A. citrulli AAC00-1, Acidovorax avenae subsp. citrulli AAC00-1, Acidovorax citrulli AAC00-1, Acidovorax citrulli str. AAC00-1, Acidovorax citrulli strain AAC00-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.