STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Aave_2866PFAM: extracellular solute-binding protein, family 1; KEGG: bxe:Bxe_C1181 ABC Fe+3 siderophore transporter, periplasmic ligand binding protein. (351 aa)    
Predicted Functional Partners:
Aave_0914
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rfr:Rfer_1594 binding-protein-dependent transport systems inner membrane component.
 
 
 0.986
Aave_0913
PFAM: ABC transporter-related protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: rfr:Rfer_1595 ABC transporter-related protein; Belongs to the ABC transporter superfamily.
 
 
 0.963
Aave_3889
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bbr:BB1044 inner membrane component of ABC transporter.
 
 
 0.935
Aave_3891
PFAM: extracellular solute-binding protein, family 1; KEGG: bbr:BB1042 extracellular solute-binding protein.
  
  
0.930
Aave_1925
KEGG: pae:PA4370 putative iron-regulated protein.
  
    0.792
Aave_2867
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; KEGG: rfr:Rfer_2204 short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.639
Aave_1540
PFAM: periplasmic binding protein; KEGG: pol:Bpro_2782 periplasmic binding protein.
  
  
 0.575
Aave_4389
Flagellar basal body-associated protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.
    
   0.571
Aave_3313
PFAM: Biopolymer transport protein ExbD/TolR; KEGG: pol:Bpro_3053 biopolymer transport protein ExbD/TolR; TC 2.C.1.1.1.
  
  
 0.509
Aave_4551
PFAM: Biopolymer transport protein ExbD/TolR; KEGG: rfr:Rfer_0757 biopolymer transport protein ExbD/TolR.
  
  
 0.509
Your Current Organism:
Acidovorax citrulli
NCBI taxonomy Id: 397945
Other names: A. citrulli AAC00-1, Acidovorax avenae subsp. citrulli AAC00-1, Acidovorax citrulli AAC00-1, Acidovorax citrulli str. AAC00-1, Acidovorax citrulli strain AAC00-1
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