Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Aave_2890TIGRFAM: phage tape measure protein; KEGG: eba:ebA7243 phage-related minor tail protein. (1137 aa)    
Predicted Functional Partners:
Aave_2888
KEGG: mca:MCA2672 hypothetical protein.
 
     0.863
Aave_2889
Hypothetical protein; KEGG: rso:RSc0874 probable transmembrane protein.
 
     0.856
Aave_2884
KEGG: mca:MCA2676 hypothetical protein.
 
     0.843
Aave_2887
KEGG: eba:ebA7239 hypothetical protein.
       0.782
Aave_2885
Hypothetical protein.
       0.776
Aave_2886
KEGG: mca:MCA2674 hypothetical protein.
       0.773
Aave_2883
KEGG: mca:MCA2677 hypothetical protein.
       0.772
Aave_2891
KEGG: xfa:XF0518 hypothetical protein.
  
   0.670
Aave_2882
Hypothetical protein.
       0.514
Aave_1637
KEGG: pae:PA0631 hypothetical protein.
  
    0.471
Your Current Organism:
Acidovorax citrulli
NCBI taxonomy Id: 397945
Other names: A. citrulli AAC00-1, Acidovorax avenae subsp. citrulli AAC00-1, Acidovorax citrulli AAC00-1, Acidovorax citrulli str. AAC00-1, Acidovorax citrulli strain AAC00-1
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