Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Aave_2899KEGG: mfa:Mfla_2700 hypothetical protein. (495 aa)    
Predicted Functional Partners:
Aave_2895
KEGG: mfa:Mfla_2696 hypothetical protein.
 
    0.793
Aave_4104
KEGG: mfa:Mfla_2696 hypothetical protein.
 
    0.793
Aave_2898
PFAM: D12 class N6 adenine-specific DNA methyltransferase; KEGG: bte:BTH_II1068 DNA adenine methylase.
 
   
 0.637
Aave_2901
KEGG: dvu:DVU2704 hypothetical protein.
 
    0.541
Aave_2900
TIGRFAM: phage uncharacterized protein; KEGG: nma:NMA1852 hypothetical protein.
 
    0.535
Aave_2897
KEGG: mfa:Mfla_2698 hypothetical protein.
       0.501
Aave_2921
PFAM: protein of unknown function DUF1018; KEGG: sgl:SG0817 hypothetical protein.
  
    0.483
Aave_4132
PFAM: protein of unknown function DUF1018; KEGG: sgl:SG0817 hypothetical protein.
  
    0.480
Aave_2902
Hypothetical protein.
       0.455
Aave_4126
KEGG: mfa:Mfla_2721 hypothetical protein.
  
     0.416
Your Current Organism:
Acidovorax citrulli
NCBI taxonomy Id: 397945
Other names: A. citrulli AAC00-1, Acidovorax avenae subsp. citrulli AAC00-1, Acidovorax citrulli AAC00-1, Acidovorax citrulli str. AAC00-1, Acidovorax citrulli strain AAC00-1
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