Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Aave_2991PFAM: Lytic transglycosylase, catalytic; KEGG: rfr:Rfer_2657 lytic transglycosylase, catalytic. (295 aa)    
Predicted Functional Partners:
Aave_2634
KEGG: rfr:Rfer_2901 putative inner membrane transmembrane protein.
  
    0.734
Aave_1927
KEGG: pol:Bpro_1726 hypothetical protein.
  
     0.713
Aave_4761
KEGG: pol:Bpro_4860 hypothetical protein.
  
     0.704
Aave_3838
KEGG: pol:Bpro_0907 hypothetical protein.
  
    0.688
Aave_4689
KEGG: pol:Bpro_0388 putative lipoprotein transmembrane.
  
     0.664
Aave_0423
PFAM: PilT protein domain protein; KEGG: rfr:Rfer_0780 protein of unknown function DUF132.
  
     0.634
Aave_4203
PFAM: Lytic transglycosylase, catalytic; KEGG: pol:Bpro_0652 lytic transglycosylase, catalytic.
  
   
 0.628
Aave_4187
PFAM: GCN5-related N-acetyltransferase; KEGG: pol:Bpro_4211 GCN5-related N-acetyltransferase.
  
     0.621
Aave_4783
PFAM: protein of unknown function DUF1239; KEGG: rfr:Rfer_4235 protein of unknown function DUF1239.
  
     0.620
Aave_2650
PFAM: Lytic transglycosylase, catalytic; MLTD_N domain protein; KEGG: pol:Bpro_2278 lytic transglycosylase, catalytic.
 
   
 0.606
Your Current Organism:
Acidovorax citrulli
NCBI taxonomy Id: 397945
Other names: A. citrulli AAC00-1, Acidovorax avenae subsp. citrulli AAC00-1, Acidovorax citrulli AAC00-1, Acidovorax citrulli str. AAC00-1, Acidovorax citrulli strain AAC00-1
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