Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Aave_3028PFAM: flavodoxin/nitric oxide synthase; KEGG: eca:ECA3603 putative flavodoxin. (184 aa)    
Predicted Functional Partners:
Aave_3540
PFAM: NAD(P)H dehydrogenase (quinone); NADPH-dependent FMN reductase; KEGG: pae:PA1225 probable NAD(P)H dehydrogenase.
    
 0.911
Aave_1295
NmrA family protein; PFAM: 3-beta hydroxysteroid dehydrogenase/isomerase; NmrA family protein; KEGG: eca:ECA4449 hypothetical protein.
    
 0.903
ubiE
Ubiquinone/menaquinone biosynthesis methyltransferase; Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3- methyl-6-methoxy-1,4-benzoquinol (DMQH2).
     
  0.900
Aave_0595
PFAM: Ferritin, Dps family protein; KEGG: rso:RSc2687 putative DNA protection during starvation or oxydative stress transcription regulator protein; Belongs to the Dps family.
  
  
 0.715
Aave_4560
PFAM: protein of unknown function DUF306, Meta and HslJ; KEGG: ppr:PBPRA2462 hypothetical protein.
   
  
 0.690
Aave_4170
PFAM: Peptidoglycan-binding LysM; transport-associated; KEGG: eba:ebA3069 conserved hypothetical protein, probably involved in cell wall turnover.
   
  
 0.631
Aave_3029
PFAM: pirin domain protein; KEGG: pol:Bpro_2901 pirin-like; Belongs to the pirin family.
       0.586
Aave_3027
PFAM: pirin domain protein; Pirin domain protein; KEGG: pol:Bpro_2897 pirin-like; Belongs to the pirin family.
       0.557
Aave_0759
PFAM: isochorismatase hydrolase; KEGG: cvi:CV1284 probable hydrolase.
   
    0.485
Aave_0313
KEGG: pol:Bpro_1153 hypothetical protein.
   
    0.479
Your Current Organism:
Acidovorax citrulli
NCBI taxonomy Id: 397945
Other names: A. citrulli AAC00-1, Acidovorax avenae subsp. citrulli AAC00-1, Acidovorax citrulli AAC00-1, Acidovorax citrulli str. AAC00-1, Acidovorax citrulli strain AAC00-1
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