Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
Aave_3166Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rfr:Rfer_2112 transcriptional regulator, LysR family. (313 aa)    
Predicted Functional Partners:
Aave_3167
PFAM: aminotransferase, class I and II; KEGG: rfr:Rfer_2111 aminotransferase, class I and II.
       0.813
Aave_3163
PFAM: permease YjgP/YjgQ family protein; KEGG: rfr:Rfer_2115 permease YjgP/YjgQ.
 
     0.710
Aave_2311
Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: pae:PA2469 probable transcriptional regulator.
  
     0.700
Aave_1224
Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: pol:Bpro_3607 transcriptional regulator, LysR family.
  
     0.693
Aave_3983
Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rme:Rmet_4033 transcriptional regulator, LysR family.
  
     0.668
Aave_0272
Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: bur:Bcep18194_A4554 transcriptional regulator, LysR family.
  
     0.658
Aave_3164
PFAM: permease YjgP/YjgQ family protein; KEGG: rfr:Rfer_2114 permease YjgP/YjgQ.
       0.657
Aave_4453
Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: pol:Bpro_5101 transcriptional regulator, LysR family.
  
     0.647
Aave_2257
Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: bur:Bcep18194_B0040 transcriptional regulator, LysR family.
  
     0.646
Aave_3911
Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: pol:Bpro_4290 transcriptional regulator, LysR family.
  
     0.643
Your Current Organism:
Acidovorax citrulli
NCBI taxonomy Id: 397945
Other names: A. citrulli AAC00-1, Acidovorax avenae subsp. citrulli AAC00-1, Acidovorax citrulli AAC00-1, Acidovorax citrulli str. AAC00-1, Acidovorax citrulli strain AAC00-1
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