STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Aave_3205PFAM: beta-lactamase domain protein; KEGG: rso:RSc1544 hypothetical protein. (290 aa)    
Predicted Functional Partners:
Aave_3206
PFAM: MmgE/PrpD family protein; KEGG: bbr:BB2960 hypothetical protein.
       0.554
Aave_4717
PFAM: protein of unknown function DUF395, YeeE/YedE; KEGG: pol:Bpro_4846 protein of unknown function DUF395, YeeE/YedE.
 
     0.550
Aave_4716
PFAM: protein of unknown function DUF395, YeeE/YedE; KEGG: pol:Bpro_4847 protein of unknown function DUF395, YeeE/YedE.
 
     0.490
Aave_4216
TIGRFAM: amino acid adenylation domain; PFAM: AMP-dependent synthetase and ligase; phosphopantetheine-binding; KEGG: psp:PSPPH_3750 non-ribosomal peptide synthetase.
   
 
 0.478
Aave_0798
PFAM: glutathione S-transferase, N-terminal domain; glutathione S-transferase, C-terminal domain; KEGG: bcn:Bcen_1203 glutathione S-transferase-like.
  
 
 0.400
Your Current Organism:
Acidovorax citrulli
NCBI taxonomy Id: 397945
Other names: A. citrulli AAC00-1, Acidovorax avenae subsp. citrulli AAC00-1, Acidovorax citrulli AAC00-1, Acidovorax citrulli str. AAC00-1, Acidovorax citrulli strain AAC00-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.