STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Aave_3206PFAM: MmgE/PrpD family protein; KEGG: bbr:BB2960 hypothetical protein. (471 aa)    
Predicted Functional Partners:
Aave_3887
TIGRFAM: phosphonopyruvate hydrolase; KEGG: bbr:BB1046 phosphoenolpyruvate phosphomutase.
 
  
 0.766
Aave_2199
KEGG: pol:Bpro_3605 citrate synthase I; TIGRFAM: citrate synthase I; PFAM: Citrate synthase; Belongs to the citrate synthase family.
  
  
 0.753
Aave_3205
PFAM: beta-lactamase domain protein; KEGG: rso:RSc1544 hypothetical protein.
       0.554
Aave_1489
Fumarase; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
  
  
 0.532
Aave_2208
PFAM: HpcH/HpaI aldolase; KEGG: pol:Bpro_3597 HpcH/HpaI aldolase; Belongs to the HpcH/HpaI aldolase family.
  
  
 0.430
Aave_0176
PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: bbr:BB3131 probable acyl-CoA dehydrogenase.
 
    0.426
Aave_4267
PFAM: amidohydrolase 2; KEGG: reu:Reut_C5930 amidohydrolase 2.
  
   
 0.425
Aave_0316
PFAM: Inner membrane CreD family protein; KEGG: pol:Bpro_0235 inner membrane CreD.
   
    0.404
Your Current Organism:
Acidovorax citrulli
NCBI taxonomy Id: 397945
Other names: A. citrulli AAC00-1, Acidovorax avenae subsp. citrulli AAC00-1, Acidovorax citrulli AAC00-1, Acidovorax citrulli str. AAC00-1, Acidovorax citrulli strain AAC00-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.