STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Aave_3208PFAM: regulatory protein, IclR; KEGG: bps:BPSS2158 IclR family transcriptional regulator. (256 aa)    
Predicted Functional Partners:
Aave_3511
PFAM: Allophanate hydrolase subunit 2; Allophanate hydrolase subunit 1; KEGG: rfr:Rfer_0869 hypothetical protein.
  
    0.940
Aave_0258
Transcriptional regulator, IclR family; PFAM: protein of unknown function UPF0074; regulatory protein, IclR; KEGG: eba:p2A140 putative IclR-family regulatory protein.
  
     0.762
Aave_0839
PFAM: regulatory protein, IclR; KEGG: ecs:ECs0401 transcriptional regulator for mhp operon.
  
     0.735
Aave_3331
PFAM: regulatory protein, IclR; KEGG: bja:bll6383 transcriptional regulatory protein.
  
     0.711
Aave_0741
PFAM: regulatory protein, IclR; KEGG: pol:Bpro_0445 transcriptional regulator, IclR family.
  
     0.680
Aave_3207
PFAM: Integrase, catalytic region; KEGG: bpa:BPP1897 IS1002 transposase.
       0.547
Aave_2272
PFAM: regulatory protein, IclR; KEGG: bxe:Bxe_B2965 transcriptional regulator, IclR family.
  
     0.546
Aave_3209
4-phosphoerythronate dehydrogenase (FAD-dependent); PFAM: FAD linked oxidase domain protein; KEGG: eba:ebA4737 FAD dependent oxidoreductase.
  
    0.528
Aave_3210
3-carboxy-cis,cis-muconate cycloisomerase; TIGRFAM: adenylosuccinate lyase; PFAM: fumarate lyase; KEGG: eca:ECA4197 probable lyase; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.
     
 0.508
Aave_3212
PFAM: Rhodanese domain protein; KEGG: bcn:Bcen_4490 3-mercaptopyruvate sulfurtransferase.
 
     0.455
Your Current Organism:
Acidovorax citrulli
NCBI taxonomy Id: 397945
Other names: A. citrulli AAC00-1, Acidovorax avenae subsp. citrulli AAC00-1, Acidovorax citrulli AAC00-1, Acidovorax citrulli str. AAC00-1, Acidovorax citrulli strain AAC00-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.