Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Aave_3340Hypothetical protein; KEGG: bld:BLi00935 YxiD. (202 aa)    
Predicted Functional Partners:
Aave_3339
KEGG: pen:PSEEN2321 hypothetical protein.
       0.773
Aave_3341
PFAM: Integrase, catalytic region; KEGG: eba:ebA5932 transposase.
       0.773
Aave_3342
KEGG: eba:ebA5933 transposition helper protein.
       0.773
Aave_3712
TIGRFAM: YD repeat protein; PFAM: RHS protein; YD repeat-containing protein; KEGG: ecj:JW3566 rhsA element core protein RshA.
  
     0.773
Aave_3796
TIGRFAM: YD repeat protein; PFAM: YD repeat-containing protein; KEGG: bur:Bcep18194_B1826 rhs family protein.
  
     0.772
Aave_0483
PFAM: PAAR repeat-containing protein; KEGG: bur:Bcep18194_B0648 rhs family protein.
  
     0.769
Your Current Organism:
Acidovorax citrulli
NCBI taxonomy Id: 397945
Other names: A. citrulli AAC00-1, Acidovorax avenae subsp. citrulli AAC00-1, Acidovorax citrulli AAC00-1, Acidovorax citrulli str. AAC00-1, Acidovorax citrulli strain AAC00-1
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