Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Aave_3389KEGG: psb:Psyr_3815 hypothetical protein. (719 aa)    
Predicted Functional Partners:
Aave_3387
PFAM: cytochrome c, class I; KEGG: pol:Bpro_3449 cytochrome c, class I.
       0.472
Aave_3388
Cytochrome c553-like protein; KEGG: pol:Bpro_3448 putative cytochrome c.
       0.472
Aave_3390
PFAM: uncharacterized protein UPF0065; KEGG: reu:Reut_B5400 hypothetical protein.
       0.463
Aave_3757
TIGRFAM: haloacid dehalogenase, type II; HAD-superfamily hydrolase, subfamily IA, variant 2 (HAD-like); PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: pol:Bpro_0056 haloacid dehalogenase, type II.
  
     0.453
Aave_2185
TIGRFAM: haloacid dehalogenase, type II; HAD-superfamily hydrolase, subfamily IA, variant 2 (HAD-like); PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: pol:Bpro_0056 haloacid dehalogenase, type II.
  
     0.440
Aave_4061
PFAM: acyltransferase 3; KEGG: xom:XOO_0713 putative O-antigen acetylase.
  
     0.430
Aave_4366
PFAM: acyltransferase 3; KEGG: mxa:MXAN_1041 acyltransferase family protein.
  
     0.412
Aave_3391
KEGG: bbr:BB3205 hypothetical protein.
       0.410
Aave_3392
PFAM: protein of unknown function DUF1446; KEGG: bbr:BB3206 hypothetical protein.
       0.400
Your Current Organism:
Acidovorax citrulli
NCBI taxonomy Id: 397945
Other names: A. citrulli AAC00-1, Acidovorax avenae subsp. citrulli AAC00-1, Acidovorax citrulli AAC00-1, Acidovorax citrulli str. AAC00-1, Acidovorax citrulli strain AAC00-1
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