STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Aave_3774KEGG: ssp:SSP1055 hypothetical protein. (389 aa)    
Predicted Functional Partners:
Aave_3773
PFAM: DNA repair protein RadC; KEGG: rfr:Rfer_3252 DNA repair protein RadC; Belongs to the UPF0758 family.
       0.610
Aave_3777
PFAM: Smr protein/MutS2; KEGG: pol:Bpro_0947 Smr protein/MutS2.
       0.559
Aave_3772
PFAM: peptidylprolyl isomerase, FKBP-type; KEGG: pol:Bpro_0950 peptidylprolyl isomerase, FKBP-type.
       0.477
ispH
4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP/MEP pathway for isoprenoid precursor biosynthesis. Belongs to the IspH family.
       0.475
Aave_4589
PFAM: major facilitator superfamily MFS_1; KEGG: bxe:Bxe_A4072 major facilitator superfamily (MFS) transporter.
  
     0.443
Aave_1298
PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: dar:Daro_0237 glycerophosphoryl diester phosphodiesterase.
   
 0.442
Aave_3776
PFAM: Cupin 2, conserved barrel domain protein; KEGG: ppu:PP_2071 hypothetical protein.
       0.406
Your Current Organism:
Acidovorax citrulli
NCBI taxonomy Id: 397945
Other names: A. citrulli AAC00-1, Acidovorax avenae subsp. citrulli AAC00-1, Acidovorax citrulli AAC00-1, Acidovorax citrulli str. AAC00-1, Acidovorax citrulli strain AAC00-1
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