STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Aave_3805PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: bxe:Bxe_C0421 putative Orn/DAP/Arg decarboxylase. (404 aa)    
Predicted Functional Partners:
Aave_3804
PFAM: AMP-dependent synthetase and ligase; KEGG: bpm:BURPS1710b_A0616 AMP-binding enzyme domain protein.
 
  
 0.948
dapF
Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan.
 
 0.942
lysA
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
  
  
 
0.920
murE
UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase; Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan. Belongs to the MurCDEF family. MurE subfamily.
     
 0.913
Aave_3803
TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: sru:SRU_2717 putative multidrug resistance protein NorM.
     
 0.792
Aave_3802
PFAM: 3-oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal domain protein; 3-oxoacyl-[acyl-carrier-protein (ACP)] synthase III; KEGG: bxe:Bxe_C0423 hypothetical protein.
  
    0.767
Aave_3801
PFAM: 3-oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal domain protein; KEGG: bxe:Bxe_C0424 hypothetical protein.
  
    0.758
Aave_3800
PFAM: phosphopantetheine-binding; KEGG: bxe:Bxe_C0425 hypothetical protein.
       0.756
Aave_3806
PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: bxe:Bxe_C0420 putative acyl-CoA dehydrogenase.
  
  
 0.725
Aave_3807
KEGG: bxe:Bxe_C0419 hypothetical protein.
     
 0.649
Your Current Organism:
Acidovorax citrulli
NCBI taxonomy Id: 397945
Other names: A. citrulli AAC00-1, Acidovorax avenae subsp. citrulli AAC00-1, Acidovorax citrulli AAC00-1, Acidovorax citrulli str. AAC00-1, Acidovorax citrulli strain AAC00-1
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