Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Aave_3864PFAM: protein of unknown function DUF1328; KEGG: pol:Bpro_0879 protein of unknown function DUF1328. (54 aa)    
Predicted Functional Partners:
Aave_3865
KEGG: pol:Bpro_0878 hypothetical protein.
  
    0.901
Aave_3866
PFAM: Rubrerythrin; Ferritin, Dps family protein; KEGG: reu:Reut_A2901 rubrerythrin:ferritin and Dps.
 
    0.868
Aave_0312
PFAM: CsbD family protein; KEGG: pol:Bpro_1152 CsbD-like; Belongs to the UPF0337 (CsbD) family.
 
    0.857
Aave_3867
PFAM: transport-associated; SMART: Transport-associated and nodulation region, bacteria; KEGG: pol:Bpro_0875 transport-associated.
 
    0.806
Aave_2301
KEGG: pol:Bpro_3349 hypothetical protein.
  
    0.758
Aave_3022
PFAM: transport-associated; KEGG: pol:Bpro_0874 transport-associated.
  
    0.718
Aave_0313
KEGG: pol:Bpro_1153 hypothetical protein.
  
    0.640
Aave_2412
PFAM: CsbD family protein; KEGG: nmu:Nmul_A1602 CsbD-like; Belongs to the UPF0337 (CsbD) family.
  
    0.631
Aave_3863
Multi-sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase domain protein; CHASE3 domain protein; histidine kinase, dimerisation and phosphoacceptor region; KEGG: pol:Bpro_0880 multi-sensor signal transduction histidine kinase.
       0.560
Aave_2281
PFAM: protein of unknown function DUF1501; KEGG: rpa:RPA3596 hypothetical protein.
   
    0.492
Your Current Organism:
Acidovorax citrulli
NCBI taxonomy Id: 397945
Other names: A. citrulli AAC00-1, Acidovorax avenae subsp. citrulli AAC00-1, Acidovorax citrulli AAC00-1, Acidovorax citrulli str. AAC00-1, Acidovorax citrulli strain AAC00-1
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