Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Aave_3922PFAM: regulatory protein, MarR; KEGG: bbr:BB1771 MarR-family transcriptional regulator. (152 aa)    
Predicted Functional Partners:
Aave_3930
KEGG: reu:Reut_A2512 hypothetical protein.
 
  
 0.694
Aave_3923
TIGRFAM: PAS sensor protein; PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; PAS fold-3 domain protein; KEGG: rme:Rmet_3682 methyl-accepting chemotaxis sensory transducer with PAS/Pac sensor.
       0.671
Aave_3924
PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: rme:Rmet_4993 major facilitator superfamily MFS_1.
       0.671
Aave_3929
PFAM: alpha/beta hydrolase fold; KEGG: bbr:BB1780 probable alpha/beta hydrolase.
 
     0.606
Aave_3927
Salicylate 1-monooxygenase; PFAM: monooxygenase, FAD-binding; KEGG: bpe:BP1954 putative monooxygenase.
 
  
 0.602
Aave_3931
PFAM: isochorismatase hydrolase; KEGG: bpe:BP1958 putative isochorismatase.
 
   
 0.565
maiA
Asp/Glu racemase; Catalyzes cis-trans isomerization of the C2-C3 double bond in maleate to yield fumarate.
 
   
 0.545
Aave_3925
PFAM: cytochrome c, class I; KEGG: bbr:BB1776 putative cytochrome.
 
     0.498
Aave_3932
Isoquinoline 1-oxidoreductase; PFAM: aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; KEGG: bpa:BPP2332 probable aldehyde dehydrogenase.
 
     0.436
Your Current Organism:
Acidovorax citrulli
NCBI taxonomy Id: 397945
Other names: A. citrulli AAC00-1, Acidovorax avenae subsp. citrulli AAC00-1, Acidovorax citrulli AAC00-1, Acidovorax citrulli str. AAC00-1, Acidovorax citrulli strain AAC00-1
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