Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Aave_3941PFAM: YCII-related; KEGG: bbr:BB0411 hypothetical protein. (98 aa)    
Predicted Functional Partners:
Aave_3942
KEGG: reu:Reut_B3888 hypothetical protein.
 
     0.690
Aave_3940
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KEGG: reu:Reut_C6281 NAD-dependent epimerase/dehydratase:short-chain dehydrogenase/reductase SDR.
       0.625
Aave_3938
PFAM: Muconolactone delta-isomerase; KEGG: rme:Rmet_4677 muconolactone delta-isomerase.
  
    0.609
Aave_3945
KEGG: rfr:Rfer_1035 3-oxoacid CoA-transferase, subunit B; TIGRFAM: 3-oxoacid CoA-transferase, B subunit; PFAM: coenzyme A transferase.
  
    0.582
Aave_3939
PFAM: short chain fatty acid transporter; KEGG: rme:Rmet_4680 short chain fatty acid transporter.
 
     0.570
Aave_3943
TIGRFAM: 3-oxoadipate enol-lactonase; PFAM: alpha/beta hydrolase fold; KEGG: pen:PSEEN1168 3-oxoadipate enol-lactonase II (beta-ketoadipate enol-lactone hydrolase II).
  
    0.535
Aave_4633
PFAM: N-formylglutamate amidohydrolase; KEGG: pol:Bpro_2708 N-formylglutamate amidohydrolase.
  
     0.510
Aave_3944
KEGG: rfr:Rfer_1034 beta-ketoadipyl CoA thiolase; TIGRFAM: acetyl-CoA acetyltransferase; beta-ketoadipyl CoA thiolase; PFAM: Thiolase; Belongs to the thiolase-like superfamily. Thiolase family.
       0.505
Your Current Organism:
Acidovorax citrulli
NCBI taxonomy Id: 397945
Other names: A. citrulli AAC00-1, Acidovorax avenae subsp. citrulli AAC00-1, Acidovorax citrulli AAC00-1, Acidovorax citrulli str. AAC00-1, Acidovorax citrulli strain AAC00-1
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