Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Aave_3971KEGG: psb:Psyr_2359 hypothetical protein. (153 aa)    
Predicted Functional Partners:
Aave_2001
TIGRFAM: hypothetical membrane protein; integral membrane protein, YccS/YhfK family; PFAM: protein of unknown function DUF893, YccS/YhfK; KEGG: pfo:Pfl_5250 intergral membrane protein.
  
     0.617
Aave_4599
PFAM: Spore coat U domain protein; KEGG: bpm:BURPS1710b_1790 hypothetical protein.
  
     0.599
Aave_4603
PFAM: Spore coat U domain protein; KEGG: bte:BTH_I2676 spore coat protein U domain family.
  
     0.517
Aave_3970
CRISPR-associated helicase, Cas3 family; KEGG: hch:HCH_02813 predicted helicase; TIGRFAM: CRISPR-associated helicase Cas3; PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: DEAD-like helicases-like.
       0.427
Aave_4600
KEGG: bte:BTH_I2679 spore coat protein U domain family.
  
     0.416
Your Current Organism:
Acidovorax citrulli
NCBI taxonomy Id: 397945
Other names: A. citrulli AAC00-1, Acidovorax avenae subsp. citrulli AAC00-1, Acidovorax citrulli AAC00-1, Acidovorax citrulli str. AAC00-1, Acidovorax citrulli strain AAC00-1
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