Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Aave_3974TIGRFAM: general secretion pathway protein F; PFAM: type II secretion system protein; KEGG: rfr:Rfer_0544 general secretion pathway protein F. (411 aa)    
Predicted Functional Partners:
Aave_4159
PFAM: type II secretion system protein; KEGG: eba:ebA1619 general secretion pathway protein F.
  
  
 
0.921
Aave_0916
KEGG: pol:Bpro_1330 type II secretion system protein E; TIGRFAM: general secretory pathway protein E; PFAM: type II secretion system protein E; SMART: AAA ATPase.
 
 
 0.918
Aave_4160
Type II secretion system protein E (GspE); Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
 
 0.918
Aave_3680
Type IV-A pilus assembly ATPase PilB; KEGG: rfr:Rfer_2902 type II secretion system protein E; TIGRFAM: type IV-A pilus assembly ATPase PilB; PFAM: type II secretion system protein E; General secretory system II, protein E domain protein; SMART: AAA ATPase.
 
 
 0.912
Aave_1068
PFAM: type II secretion system protein E; General secretory system II, protein E domain protein; SMART: AAA ATPase; KEGG: rfr:Rfer_3214 type II secretion system protein E.
 
 
 0.911
Aave_2722
PFAM: type II secretion system protein E; KEGG: bte:BTH_II0772 type II/IV secretion system protein.
 
 
 0.906
Aave_3682
Type 4 prepilin peptidase 1; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
  
 0.867
Aave_0925
TIGRFAM: general secretion pathway protein G; PFAM: type II secretion system protein G; KEGG: rfr:Rfer_0534 general secretion pathway protein G.
 
  
 0.858
Aave_0917
TIGRFAM: general secretion pathway protein D; PFAM: type II and III secretion system protein; NolW domain protein; KEGG: pol:Bpro_1329 type II and III secretion system protein.
 
  
 0.818
Aave_3975
PFAM: 5-nucleotidase; KEGG: pol:Bpro_0738 5-nucleotidase.
       0.812
Your Current Organism:
Acidovorax citrulli
NCBI taxonomy Id: 397945
Other names: A. citrulli AAC00-1, Acidovorax avenae subsp. citrulli AAC00-1, Acidovorax citrulli AAC00-1, Acidovorax citrulli str. AAC00-1, Acidovorax citrulli strain AAC00-1
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