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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Aave_4100KEGG: xfa:XF0518 hypothetical protein. (338 aa)    
Predicted Functional Partners:
Aave_4170
PFAM: Peptidoglycan-binding LysM; transport-associated; KEGG: eba:ebA3069 conserved hypothetical protein, probably involved in cell wall turnover.
  
 
 0.754
Aave_4687
PFAM: Peptidoglycan-binding LysM; KEGG: rfr:Rfer_3861 peptidoglycan-binding LysM.
  
 
 0.754
Aave_2376
KEGG: rfr:Rfer_4390 hypothetical protein.
  
  
 0.613
Aave_1726
Hypothetical protein; KEGG: stm:STM4199 putative cytoplasmic protein.
  
  
 0.611
Aave_4099
TIGRFAM: phage tape measure protein; KEGG: eba:ebA7243 phage-related minor tail protein.
  
    0.519
Aave_4101
KEGG: mfa:Mfla_2693 hypothetical protein.
       0.461
Aave_4102
KEGG: vvu:VV10102 hypothetical protein.
       0.461
Aave_4103
KEGG: mfa:Mfla_2695 hypothetical protein.
       0.461
Aave_4098
Hypothetical protein; KEGG: rso:RSc0874 probable transmembrane protein.
       0.437
Aave_4097
KEGG: mca:MCA2672 hypothetical protein.
       0.436
Your Current Organism:
Acidovorax citrulli
NCBI taxonomy Id: 397945
Other names: A. citrulli AAC00-1, Acidovorax avenae subsp. citrulli AAC00-1, Acidovorax citrulli AAC00-1, Acidovorax citrulli str. AAC00-1, Acidovorax citrulli strain AAC00-1
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