STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Aave_4115Putative phage repressor; PFAM: helix-turn-helix domain protein; peptidase S24, S26A and S26B; KEGG: pol:Bpro_0998 putative phage repressor. (248 aa)    
Predicted Functional Partners:
Aave_4119
PFAM: Integrase, catalytic region; KEGG: nma:NMA1882 transposase.
 
     0.784
Aave_3589
Putative phage repressor; PFAM: peptidase S24, S26A and S26B; KEGG: cya:CYA_1992 peptidase, S24 (LexA) family; Belongs to the peptidase S24 family.
  
     0.774
Aave_4120
KEGG: dvu:DVU2689 bacteriophage DNA transposition B protein.
 
     0.730
Aave_2907
PFAM: Integrase, catalytic region; KEGG: nma:NMA1284 phage transposase.
 
     0.706
Aave_4128
KEGG: ngo:NGO0464 hypothetical protein, putative phage associated protein.
 
     0.701
Aave_4116
KEGG: pol:Bpro_0997 putative transcriptional regulator, Nlp.
 
     0.699
Aave_4126
KEGG: mfa:Mfla_2721 hypothetical protein.
 
     0.698
Aave_2900
TIGRFAM: phage uncharacterized protein; KEGG: nma:NMA1852 hypothetical protein.
 
     0.658
Aave_4110
TIGRFAM: phage uncharacterized protein; KEGG: nma:NMA1852 hypothetical protein.
 
     0.658
Aave_2908
KEGG: dvu:DVU2689 bacteriophage DNA transposition B protein.
 
     0.656
Your Current Organism:
Acidovorax citrulli
NCBI taxonomy Id: 397945
Other names: A. citrulli AAC00-1, Acidovorax avenae subsp. citrulli AAC00-1, Acidovorax citrulli AAC00-1, Acidovorax citrulli str. AAC00-1, Acidovorax citrulli strain AAC00-1
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