Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Aave_4116KEGG: pol:Bpro_0997 putative transcriptional regulator, Nlp. (90 aa)    
Predicted Functional Partners:
Aave_4119
PFAM: Integrase, catalytic region; KEGG: nma:NMA1882 transposase.
 
   
 0.842
Aave_4120
KEGG: dvu:DVU2689 bacteriophage DNA transposition B protein.
 
   
 0.769
Aave_2907
PFAM: Integrase, catalytic region; KEGG: nma:NMA1284 phage transposase.
 
   
 0.742
Aave_4126
KEGG: mfa:Mfla_2721 hypothetical protein.
 
    0.712
Aave_4115
Putative phage repressor; PFAM: helix-turn-helix domain protein; peptidase S24, S26A and S26B; KEGG: pol:Bpro_0998 putative phage repressor.
 
     0.697
Aave_2908
KEGG: dvu:DVU2689 bacteriophage DNA transposition B protein.
 
   
 0.673
Aave_4117
PFAM: transposase IS3/IS911 family protein; KEGG: mxa:MXAN_1716 transposase orfA, IS3 family.
       0.658
Aave_2914
KEGG: nma:NMA1871 hypothetical protein.
 
    0.644
Aave_4128
KEGG: ngo:NGO0464 hypothetical protein, putative phage associated protein.
 
     0.604
Aave_2901
KEGG: dvu:DVU2704 hypothetical protein.
  
     0.585
Your Current Organism:
Acidovorax citrulli
NCBI taxonomy Id: 397945
Other names: A. citrulli AAC00-1, Acidovorax avenae subsp. citrulli AAC00-1, Acidovorax citrulli AAC00-1, Acidovorax citrulli str. AAC00-1, Acidovorax citrulli strain AAC00-1
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