Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Aave_4124KEGG: pol:Bpro_0996 hypothetical protein. (140 aa)    
Predicted Functional Partners:
Aave_4125
Hypothetical protein.
       0.773
Aave_4126
KEGG: mfa:Mfla_2721 hypothetical protein.
       0.746
Aave_4127
KEGG: pol:Bpro_3764 hypothetical protein.
       0.736
Aave_4128
KEGG: ngo:NGO0464 hypothetical protein, putative phage associated protein.
       0.736
Aave_4120
KEGG: dvu:DVU2689 bacteriophage DNA transposition B protein.
       0.441
Aave_4121
Hypothetical protein.
       0.441
Aave_4122
KEGG: mca:MCA2952 hypothetical protein.
       0.441
Aave_4123
Hypothetical protein.
       0.441
Aave_4129
Hypothetical protein.
       0.429
Your Current Organism:
Acidovorax citrulli
NCBI taxonomy Id: 397945
Other names: A. citrulli AAC00-1, Acidovorax avenae subsp. citrulli AAC00-1, Acidovorax citrulli AAC00-1, Acidovorax citrulli str. AAC00-1, Acidovorax citrulli strain AAC00-1
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