STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Aave_4264PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: bcn:Bcen_2208 transposase IS116/IS110/IS902. (316 aa)    
Predicted Functional Partners:
Aave_4265
PFAM: uncharacterized protein UPF0065; KEGG: reu:Reut_C5932 hypothetical protein.
       0.469
Aave_4266
PFAM: Endoribonuclease L-PSP; KEGG: reu:Reut_C5931 endoribonuclease L-PSP.
       0.469
Aave_4263
PFAM: flavin reductase domain protein, FMN-binding; KEGG: reu:Reut_C5933 hypothetical protein.
       0.418
Aave_4262
Transcriptional regulator, IclR family; PFAM: regulatory protein, IclR; KEGG: reu:Reut_C5934 regulatory protein, IclR.
       0.402
Your Current Organism:
Acidovorax citrulli
NCBI taxonomy Id: 397945
Other names: A. citrulli AAC00-1, Acidovorax avenae subsp. citrulli AAC00-1, Acidovorax citrulli AAC00-1, Acidovorax citrulli str. AAC00-1, Acidovorax citrulli strain AAC00-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.