Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
Aave_4271PFAM: regulatory protein, MarR; KEGG: pol:Bpro_0623 transcriptional regulator, MarR family. (156 aa)    
Predicted Functional Partners:
Aave_4272
PFAM: OsmC family protein; KEGG: pfo:Pfl_2206 OsmC-like protein.
  
 0.972
Aave_0324
PFAM: regulatory protein, MarR; KEGG: pol:Bpro_3237 transcriptional regulator, MarR family.
  
     0.639
Aave_4270
PFAM: HpcH/HpaI aldolase; KEGG: reu:Reut_C5927 2-dehydro-3-deoxyglucarate aldolase; Belongs to the HpcH/HpaI aldolase family.
     
 0.544
Aave_4268
PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: reu:Reut_C5929 5-carboxymethyl-2-hydroxymuconate delta-isomerase.
     
 0.448
Aave_4267
PFAM: amidohydrolase 2; KEGG: reu:Reut_C5930 amidohydrolase 2.
       0.446
Aave_4269
KEGG: reu:Reut_C5928 hydratase/decarboxylase; TIGRFAM: 2-oxo-hepta-3-ene-1,7-dioic acid hydratase; PFAM: Hydratase/decarboxylase.
       0.446
Your Current Organism:
Acidovorax citrulli
NCBI taxonomy Id: 397945
Other names: A. citrulli AAC00-1, Acidovorax avenae subsp. citrulli AAC00-1, Acidovorax citrulli AAC00-1, Acidovorax citrulli str. AAC00-1, Acidovorax citrulli strain AAC00-1
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