STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Aave_4305PFAM: class II aldolase/adducin family protein; KEGG: reu:Reut_A0893 hypothetical protein. (264 aa)    
Predicted Functional Partners:
Aave_2208
PFAM: HpcH/HpaI aldolase; KEGG: pol:Bpro_3597 HpcH/HpaI aldolase; Belongs to the HpcH/HpaI aldolase family.
   
    0.783
Aave_4306
PFAM: electron transfer flavoprotein beta-subunit; electron transfer flavoprotein, alpha subunit; KEGG: bbr:BB0621 electron transfer flavoprotein alpha-subunit.
  
    0.656
Aave_4304
PFAM: uncharacterized protein UPF0065; KEGG: pol:Bpro_2668 uncharacterized protein UPF0065.
       0.645
Aave_4326
TIGRFAM: 2,3-diketo-5-methylthio-1-phosphopentane phosphatase; PFAM: HAD-superfamily hydrolase, subfamily IB hypothetical 1; KEGG: pfl:PFL_4883 phosphoserine phosphatase, putative.
  
  
 0.569
Aave_4631
PFAM: leucine-rich repeat protein; KEGG: xcb:XC_1553 leucin rich protein.
   
  0.482
Aave_4250
Fructose PTS system EIIBC or EIIC component; TIGRFAM: PTS system, fructose-specific, IIB subunnit; PTS system, fructose subfamily, IIC subunit; PFAM: phosphotransferase system, EIIC; phosphotransferase system PTS, fructose-specific IIB subunit; KEGG: bte:BTH_II0908 protein-N p-phosphohistidine-sugar phosphotransferase; TC 4.A.2.1.1; TC 4.A.2.1.1.
   
  
 0.462
Aave_4307
PFAM: electron transfer flavoprotein beta-subunit; KEGG: bbr:BB0620 electron transfer flavoprotein beta-subunit.
  
    0.457
Aave_4584
S-adenosylmethionine decarboxylase related protein; Catalyzes the decarboxylation of S-adenosylmethionine to S- adenosylmethioninamine (dcAdoMet), the propylamine donor required for the synthesis of the polyamines spermine and spermidine from the diamine putrescine.
     
 0.438
Aave_4303
PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: tbd:Tbd_1620 chemotaxis sensory transducer.
       0.428
Your Current Organism:
Acidovorax citrulli
NCBI taxonomy Id: 397945
Other names: A. citrulli AAC00-1, Acidovorax avenae subsp. citrulli AAC00-1, Acidovorax citrulli AAC00-1, Acidovorax citrulli str. AAC00-1, Acidovorax citrulli strain AAC00-1
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