Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
Aave_4329KEGG: pfl:PFL_4880 hypothetical protein. (137 aa)    
Predicted Functional Partners:
Aave_4327
PFAM: alpha/beta hydrolase fold; KEGG: pfl:PFL_4885 carboxylesterase.
       0.799
Aave_4328
KEGG: pfl:PFL_4879 hypothetical protein.
       0.791
Aave_4330
PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: dvu:DVUA0045 aminotransferase, DegT/DnrJ/EryC1/StrS family; Belongs to the DegT/DnrJ/EryC1 family.
       0.791
Aave_4326
TIGRFAM: 2,3-diketo-5-methylthio-1-phosphopentane phosphatase; PFAM: HAD-superfamily hydrolase, subfamily IB hypothetical 1; KEGG: pfl:PFL_4883 phosphoserine phosphatase, putative.
       0.722
Aave_4325
PFAM: secretion protein HlyD family protein; KEGG: ccr:CC2092 HlyD family secretion protein.
       0.701
Aave_4323
PFAM: protein of unknown function DUF214; KEGG: ccr:CC2090 hypothetical protein.
       0.700
Aave_4322
Transcriptional regulator, Fis family; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: bur:Bcep18194_B0723 RND efflux system, outer membrane lipoprotein, NodT family.
       0.692
Aave_4324
PFAM: ABC transporter-related protein; SMART: AAA ATPase; KEGG: ccr:CC2091 ABC transporter, ATP-binding protein.
       0.691
Aave_4321
Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: bcn:Bcen_5049 two component transcriptional regulator, winged helix family.
       0.493
Your Current Organism:
Acidovorax citrulli
NCBI taxonomy Id: 397945
Other names: A. citrulli AAC00-1, Acidovorax avenae subsp. citrulli AAC00-1, Acidovorax citrulli AAC00-1, Acidovorax citrulli str. AAC00-1, Acidovorax citrulli strain AAC00-1
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