Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Aave_4331KEGG: pfl:PFL_4878 hypothetical protein. (302 aa)    
Predicted Functional Partners:
Aave_4332
KEGG: pfl:PFL_4886 hypothetical protein.
 
     0.950
Aave_4333
4-aminobutyrate aminotransferase apoenzyme; PFAM: aminotransferase class-III; KEGG: pfl:PFL_4884 aminotransferase, class III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
  
 0.894
Aave_4326
TIGRFAM: 2,3-diketo-5-methylthio-1-phosphopentane phosphatase; PFAM: HAD-superfamily hydrolase, subfamily IB hypothetical 1; KEGG: pfl:PFL_4883 phosphoserine phosphatase, putative.
 
     0.797
Aave_4328
KEGG: pfl:PFL_4879 hypothetical protein.
 
     0.786
Aave_4327
PFAM: alpha/beta hydrolase fold; KEGG: pfl:PFL_4885 carboxylesterase.
 
     0.756
leuS
TIGRFAM: leucyl-tRNA synthetase; KEGG: rfr:Rfer_0758 leucyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
    
   0.661
Aave_4584
S-adenosylmethionine decarboxylase related protein; Catalyzes the decarboxylation of S-adenosylmethionine to S- adenosylmethioninamine (dcAdoMet), the propylamine donor required for the synthesis of the polyamines spermine and spermidine from the diamine putrescine.
  
  
 0.656
Aave_4323
PFAM: protein of unknown function DUF214; KEGG: ccr:CC2090 hypothetical protein.
  
     0.654
Aave_1600
Hypothetical protein; KEGG: cgb:cg1965 similarity to hypothetical protein GP57-phage N15.
  
     0.611
hutH
KEGG: pol:Bpro_1043 histidine ammonia-lyase; TIGRFAM: histidine ammonia-lyase; PFAM: phenylalanine/histidine ammonia-lyase; Belongs to the PAL/histidase family.
  
  
 0.600
Your Current Organism:
Acidovorax citrulli
NCBI taxonomy Id: 397945
Other names: A. citrulli AAC00-1, Acidovorax avenae subsp. citrulli AAC00-1, Acidovorax citrulli AAC00-1, Acidovorax citrulli str. AAC00-1, Acidovorax citrulli strain AAC00-1
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