STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Aave_4331KEGG: pfl:PFL_4878 hypothetical protein. (302 aa)    
Predicted Functional Partners:
Aave_4332
KEGG: pfl:PFL_4886 hypothetical protein.
 
     0.951
Aave_4333
4-aminobutyrate aminotransferase apoenzyme; PFAM: aminotransferase class-III; KEGG: pfl:PFL_4884 aminotransferase, class III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
  
 0.896
Aave_4326
TIGRFAM: 2,3-diketo-5-methylthio-1-phosphopentane phosphatase; PFAM: HAD-superfamily hydrolase, subfamily IB hypothetical 1; KEGG: pfl:PFL_4883 phosphoserine phosphatase, putative.
 
     0.790
Aave_4328
KEGG: pfl:PFL_4879 hypothetical protein.
 
     0.786
Aave_4327
PFAM: alpha/beta hydrolase fold; KEGG: pfl:PFL_4885 carboxylesterase.
 
   
 0.748
hutH
KEGG: pol:Bpro_1043 histidine ammonia-lyase; TIGRFAM: histidine ammonia-lyase; PFAM: phenylalanine/histidine ammonia-lyase; Belongs to the PAL/histidase family.
  
  
 0.654
Aave_4323
PFAM: protein of unknown function DUF214; KEGG: ccr:CC2090 hypothetical protein.
  
     0.654
Aave_4584
S-adenosylmethionine decarboxylase related protein; Catalyzes the decarboxylation of S-adenosylmethionine to S- adenosylmethioninamine (dcAdoMet), the propylamine donor required for the synthesis of the polyamines spermine and spermidine from the diamine putrescine.
  
  
 0.619
Aave_1600
Hypothetical protein; KEGG: cgb:cg1965 similarity to hypothetical protein GP57-phage N15.
  
     0.611
Aave_4330
PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: dvu:DVUA0045 aminotransferase, DegT/DnrJ/EryC1/StrS family; Belongs to the DegT/DnrJ/EryC1 family.
  
     0.567
Your Current Organism:
Acidovorax citrulli
NCBI taxonomy Id: 397945
Other names: A. citrulli AAC00-1, Acidovorax avenae subsp. citrulli AAC00-1, Acidovorax citrulli AAC00-1, Acidovorax citrulli str. AAC00-1, Acidovorax citrulli strain AAC00-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.