Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
Aave_4344PFAM: porin, Gram-negative type; KEGG: reu:Reut_B5850 porin, gram-negative type. (340 aa)    
Predicted Functional Partners:
Aave_2295
KEGG: eba:ebB41 hypothetical protein.
  
     0.597
Aave_0296
KEGG: pol:Bpro_0224 putative rod shape-determining MreD transmembrane protein.
  
     0.578
Aave_4689
KEGG: pol:Bpro_0388 putative lipoprotein transmembrane.
  
   
 0.573
Aave_0933
PFAM: porin, Gram-negative type; KEGG: rme:Rmet_4834 porin, gram-negative type.
  
  
 
0.546
Aave_1125
PFAM: porin, Gram-negative type; KEGG: rso:RS00714 probable porin precursor transmembrane protein.
  
  
 
0.532
Aave_0932
PFAM: porin, Gram-negative type; KEGG: pol:Bpro_3679 porin, gram-negative type.
  
  
 
0.521
Aave_3386
KEGG: pol:Bpro_1834 hypothetical protein.
  
 
   0.520
Aave_1879
PFAM: OmpA domain protein transmembrane region-containing protein; KEGG: pol:Bpro_2709 OmpA-like transmembrane region.
   
 
 0.501
Aave_4527
KEGG: rfr:Rfer_3589 putative proline rich signal peptide protein.
  
     0.495
Aave_2271
PFAM: porin, Gram-negative type; KEGG: rso:RSc2136 probable porin signal peptide protein.
  
  
 
0.492
Your Current Organism:
Acidovorax citrulli
NCBI taxonomy Id: 397945
Other names: A. citrulli AAC00-1, Acidovorax avenae subsp. citrulli AAC00-1, Acidovorax citrulli AAC00-1, Acidovorax citrulli str. AAC00-1, Acidovorax citrulli strain AAC00-1
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