Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Aave_4466PFAM: sulfatase; KEGG: nar:Saro_0474 sulfatase. (453 aa)    
Predicted Functional Partners:
Aave_4459
PFAM: protein of unknown function DUF323; KEGG: rba:RB8026 hypothetical protein.
 
   0.802
Aave_4467
PFAM: uncharacterized protein UPF0065; KEGG: bbr:BB1787 hypothetical protein.
       0.766
Aave_0525
PFAM: SEFIR domain protein; KEGG: shm:Shewmr7_1857 SEFIR domain protein.
 
   0.597
Aave_4468
PFAM: regulatory protein, MarR; transcriptional regulator TrmB; KEGG: bbr:BB1786 putative transcriptional regulator.
 
     0.595
Aave_4464
KEGG: tbd:Tbd_2277 hypothetical protein.
       0.578
Aave_4465
Prevent-host-death family protein; Antitoxin component of a type II toxin-antitoxin (TA) system.
       0.578
Aave_3090
PFAM: protein of unknown function DUF323; KEGG: bbr:BB1966 hypothetical protein.
  
   0.546
Aave_3056
KEGG: rfr:Rfer_2460 sulfate adenylyltransferase, large subunit; TIGRFAM: sulfate adenylyltransferase, large subunit; PFAM: protein synthesis factor, GTP-binding.
     
 0.476
Aave_1008
PFAM: glutamine amidotransferase, class-II; glutamate synthase, alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: rfr:Rfer_2933 glutamate synthase (ferredoxin).
   
  
 0.471
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.465
Your Current Organism:
Acidovorax citrulli
NCBI taxonomy Id: 397945
Other names: A. citrulli AAC00-1, Acidovorax avenae subsp. citrulli AAC00-1, Acidovorax citrulli AAC00-1, Acidovorax citrulli str. AAC00-1, Acidovorax citrulli strain AAC00-1
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