Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Aave_4499Transcriptional regulator, XRE family; SMART: helix-turn-helix domain protein; KEGG: pol:Bpro_0454 transcriptional regulator, XRE family. (243 aa)    
Predicted Functional Partners:
Aave_4488
KEGG: pol:Bpro_0460 hypothetical protein.
 
     0.723
Aave_4490
PFAM: YiaAB two helix domain protein; KEGG: pol:Bpro_0458 hypothetical protein.
 
     0.686
Aave_4498
KEGG: pol:Bpro_0456 hypothetical protein.
 
     0.657
Aave_4497
PFAM: phospholipid/glycerol acyltransferase; major facilitator superfamily MFS_1; KEGG: pol:Bpro_0457 phospholipid/glycerol acyltransferase.
 
     0.618
Aave_0924
TIGRFAM: general secretion pathway protein H; KEGG: rfr:Rfer_0535 general secretion pathway protein H.
  
     0.577
Aave_0743
PFAM: GumN family protein; KEGG: gox:GOX1248 hypothetical protein.
  
     0.541
Aave_1449
KEGG: pol:Bpro_1821 putative transmembrane protein.
  
     0.532
Aave_4672
PFAM: protein of unknown function DUF1289; KEGG: pol:Bpro_4664 protein of unknown function DUF1289.
  
     0.457
Aave_1938
KEGG: bur:Bcep18194_B0200 integral membrane protein-like.
  
     0.453
Aave_2952
PFAM: protein of unknown function DUF1624; KEGG: rfr:Rfer_2413 protein of unknown function DUF1624.
  
     0.440
Your Current Organism:
Acidovorax citrulli
NCBI taxonomy Id: 397945
Other names: A. citrulli AAC00-1, Acidovorax avenae subsp. citrulli AAC00-1, Acidovorax citrulli AAC00-1, Acidovorax citrulli str. AAC00-1, Acidovorax citrulli strain AAC00-1
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