Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Aave_4529LemA; KEGG: pol:Bpro_4440 LemA. (197 aa)    
Predicted Functional Partners:
Aave_4527
KEGG: rfr:Rfer_3589 putative proline rich signal peptide protein.
       0.603
Aave_4526
Multi-sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein; SMART: PAS domain containing protein; KEGG: rfr:Rfer_3588 multi-sensor signal transduction histidine kinase.
       0.596
Aave_4528
TIGRFAM: sun protein; PFAM: Fmu (Sun) domain protein; KEGG: pol:Bpro_4436 sun protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.
       0.572
Aave_4525
Two component transcriptional regulator, Fis family; PFAM: response regulator receiver; helix-turn-helix, Fis-type; KEGG: reu:Reut_A3402 helix-turn-helix, fis-type.
       0.555
Aave_0245
KEGG: pol:Bpro_1033 hypothetical protein.
  
     0.486
rpoC
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
       0.475
Aave_4642
KEGG: rfr:Rfer_3864 hypothetical protein.
  
    0.456
Aave_4476
Phospholipase A1; Hydrolysis of phosphatidylcholine with phospholipase A2 (EC 3.1.1.4) and phospholipase A1 (EC 3.1.1.32) activities. Belongs to the phospholipase A1 family.
  
     0.445
Aave_4168
KEGG: rfr:Rfer_3530 hypothetical protein.
 
   
 0.441
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
       0.441
Your Current Organism:
Acidovorax citrulli
NCBI taxonomy Id: 397945
Other names: A. citrulli AAC00-1, Acidovorax avenae subsp. citrulli AAC00-1, Acidovorax citrulli AAC00-1, Acidovorax citrulli str. AAC00-1, Acidovorax citrulli strain AAC00-1
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