Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Aave_4566PFAM: OmpW family protein; KEGG: rfr:Rfer_0194 OmpW. (230 aa)    
Predicted Functional Partners:
Aave_4567
KEGG: rso:RSc0580 putative lipase / esterase protein.
     
 0.789
Aave_1531
KEGG: pol:Bpro_1208 oxygen-independent coproporphyrinogen III oxidase; TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM domain protein; HemN domain protein; SMART: Elongator protein 3/MiaB/NifB; Belongs to the anaerobic coproporphyrinogen-III oxidase family.
 
  
 0.727
Aave_1524
TIGRFAM: cytochrome c oxidase, cbb3-type, subunit II; PFAM: cytochrome C oxidase, mono-heme subunit/FixO; KEGG: pol:Bpro_4304 cytochrome c oxidase, cbb3-type, subunit II.
 
    0.686
Aave_1527
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: pol:Bpro_4301 4Fe-4S ferredoxin, iron-sulfur binding.
 
  
 0.591
Aave_1523
TIGRFAM: cytochrome c oxidase, cbb3-type, subunit I; PFAM: cytochrome c oxidase, subunit I; KEGG: pol:Bpro_4305 cytochrome c oxidase, cbb3-type, subunit I; Belongs to the heme-copper respiratory oxidase family.
 
  
 0.584
Aave_0190
PFAM: protein of unknown function DUF344; KEGG: pol:Bpro_4050 protein of unknown function DUF344.
   
    0.479
Aave_0991
PFAM: beta-lactamase domain protein; KEGG: reu:Reut_A0043 beta-lactamase-like.
   
    0.476
Aave_1526
Cytochrome c oxidase, cbb3-type, subunit III; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex.
 
  
 0.461
Aave_1879
PFAM: OmpA domain protein transmembrane region-containing protein; KEGG: pol:Bpro_2709 OmpA-like transmembrane region.
  
  
 0.450
Aave_4568
D-Ala-D-Ala carboxypeptidase PBP3; TIGRFAM: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; PFAM: peptidase S13, D-Ala-D-Ala carboxypeptidase C; KEGG: rfr:Rfer_0191 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; Serine peptidase; MEROPS family S13.
       0.406
Your Current Organism:
Acidovorax citrulli
NCBI taxonomy Id: 397945
Other names: A. citrulli AAC00-1, Acidovorax avenae subsp. citrulli AAC00-1, Acidovorax citrulli AAC00-1, Acidovorax citrulli str. AAC00-1, Acidovorax citrulli strain AAC00-1
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