Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Aave_4651PFAM: MltA domain protein; 3D domain protein; KEGG: rfr:Rfer_0365 MltA. (433 aa)    
Predicted Functional Partners:
Aave_4652
PFAM: OmpA/MotB domain protein; KEGG: rfr:Rfer_0206 OmpA/MotB.
     
 0.540
Aave_0843
PFAM: ribonuclease II; KEGG: pol:Bpro_1089 ribonuclease II.
  
     0.539
Aave_2990
PFAM: protein of unknown function DUF748; KEGG: pol:Bpro_2872 protein of unknown function DUF748.
  
   
 0.401
Aave_4568
D-Ala-D-Ala carboxypeptidase PBP3; TIGRFAM: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; PFAM: peptidase S13, D-Ala-D-Ala carboxypeptidase C; KEGG: rfr:Rfer_0191 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; Serine peptidase; MEROPS family S13.
  
   
 0.400
Your Current Organism:
Acidovorax citrulli
NCBI taxonomy Id: 397945
Other names: A. citrulli AAC00-1, Acidovorax avenae subsp. citrulli AAC00-1, Acidovorax citrulli AAC00-1, Acidovorax citrulli str. AAC00-1, Acidovorax citrulli strain AAC00-1
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