Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Aave_4672PFAM: protein of unknown function DUF1289; KEGG: pol:Bpro_4664 protein of unknown function DUF1289. (146 aa)    
Predicted Functional Partners:
Aave_1882
KEGG: rfr:Rfer_1400 hypothetical protein.
  
     0.760
Aave_0924
TIGRFAM: general secretion pathway protein H; KEGG: rfr:Rfer_0535 general secretion pathway protein H.
  
     0.753
Aave_0351
KEGG: pol:Bpro_0295 hypothetical protein.
  
     0.731
Aave_0918
PFAM: type II secretion system protein N; KEGG: rfr:Rfer_0541 putative general secretory pathway N transmembrane protein.
  
     0.727
Aave_0920
KEGG: pol:Bpro_1326 hypothetical protein.
  
     0.713
Aave_0135
PFAM: metallophosphoesterase; KEGG: pol:Bpro_0155 metallophosphoesterase.
  
     0.705
Aave_0921
PFAM: General secretion pathway protein K; KEGG: pol:Bpro_1325 general secretion pathway protein K.
  
     0.701
Aave_4671
KEGG: pol:Bpro_4663 hypothetical protein.
       0.641
Aave_0985
PFAM: ResB family protein; KEGG: pol:Bpro_0773 ResB-like.
  
     0.599
Aave_1996
PFAM: HemY domain protein; KEGG: pol:Bpro_3661 putative porphyrin biosynthesis related protein.
  
     0.570
Your Current Organism:
Acidovorax citrulli
NCBI taxonomy Id: 397945
Other names: A. citrulli AAC00-1, Acidovorax avenae subsp. citrulli AAC00-1, Acidovorax citrulli AAC00-1, Acidovorax citrulli str. AAC00-1, Acidovorax citrulli strain AAC00-1
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