STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Aave_4689KEGG: pol:Bpro_0388 putative lipoprotein transmembrane. (167 aa)    
Predicted Functional Partners:
def-2
Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.
  
    0.774
Aave_0862
KEGG: rfr:Rfer_3349 histone protein.
  
   
 0.769
Aave_1336
PFAM: NlpBDapX family lipoprotein; KEGG: rfr:Rfer_2096 NlpBDapX lipoprotein.
  
 
 0.752
Aave_4692
PFAM: branched-chain amino acid transport; KEGG: pol:Bpro_4636 branched-chain amino acid transport.
 
     0.747
Aave_4691
PFAM: AzlC family protein; KEGG: pol:Bpro_4637 AzlC-like.
 
     0.743
Aave_1125
PFAM: porin, Gram-negative type; KEGG: rso:RS00714 probable porin precursor transmembrane protein.
  
     0.735
Aave_0933
PFAM: porin, Gram-negative type; KEGG: rme:Rmet_4834 porin, gram-negative type.
  
     0.734
Aave_3386
KEGG: pol:Bpro_1834 hypothetical protein.
  
  
 0.722
bamA
Surface antigen (D15); Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
 
 
 0.709
bamD
Putative transmembrane protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
   
 
 0.688
Your Current Organism:
Acidovorax citrulli
NCBI taxonomy Id: 397945
Other names: A. citrulli AAC00-1, Acidovorax avenae subsp. citrulli AAC00-1, Acidovorax citrulli AAC00-1, Acidovorax citrulli str. AAC00-1, Acidovorax citrulli strain AAC00-1
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