Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Aave_4704KEGG: eli:ELI_01990 hypothetical protein. (647 aa)    
Predicted Functional Partners:
Aave_4705
PFAM: protein of unknown function DUF1501; KEGG: eli:ELI_01985 hypothetical protein.
 
     0.925
Aave_2281
PFAM: protein of unknown function DUF1501; KEGG: rpa:RPA3596 hypothetical protein.
 
     0.773
Aave_4703
PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: rfr:Rfer_1480 methyl-accepting chemotaxis sensory transducer.
       0.512
Aave_3269
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: xcb:XC_2137 TonB-dependent receptor.
  
     0.453
Aave_0743
PFAM: GumN family protein; KEGG: gox:GOX1248 hypothetical protein.
  
     0.427
Your Current Organism:
Acidovorax citrulli
NCBI taxonomy Id: 397945
Other names: A. citrulli AAC00-1, Acidovorax avenae subsp. citrulli AAC00-1, Acidovorax citrulli AAC00-1, Acidovorax citrulli str. AAC00-1, Acidovorax citrulli strain AAC00-1
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