STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Aave_4792PFAM: extracellular solute-binding protein, family 5; KEGG: bpe:BP3237 putative binding-protein-dependent transport protein (periplasmic). (528 aa)    
Predicted Functional Partners:
Aave_0934
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_2112 binding-protein-dependent transport systems inner membrane component.
 
 0.863
Aave_0937
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_2114 binding-protein-dependent transport systems inner membrane component.
 
 
 0.861
Aave_0938
KEGG: pol:Bpro_2115 oligopeptide/dipeptide ABC transporter, ATP-binding protein-like; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter-related protein; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.
 
  
 0.801
Aave_0939
KEGG: pol:Bpro_2116 oligopeptide/dipeptide ABC transporter, ATP-binding protein-like; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter-related protein; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.
 
  
 0.771
Aave_3615
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bja:blr3231 ABC transporter permease protein.
 
 
 0.768
Aave_3614
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bja:blr3230 ABC transporter permease protein.
 
 0.745
Aave_4002
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mfa:Mfla_2389 binding-protein-dependent transport systems inner membrane component.
 
 
 0.707
Aave_1659
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_0138 binding-protein-dependent transport systems inner membrane component.
 
 0.705
Aave_1660
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_0137 binding-protein-dependent transport systems inner membrane component.
 
 
 0.680
Aave_4003
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mfa:Mfla_2390 binding-protein-dependent transport systems inner membrane component.
 
 
 0.636
Your Current Organism:
Acidovorax citrulli
NCBI taxonomy Id: 397945
Other names: A. citrulli AAC00-1, Acidovorax avenae subsp. citrulli AAC00-1, Acidovorax citrulli AAC00-1, Acidovorax citrulli str. AAC00-1, Acidovorax citrulli strain AAC00-1
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