STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Cmaq_0041KEGG: pis:Pisl_0849 hypothetical protein. (439 aa)    
Predicted Functional Partners:
Cmaq_0788
KEGG: pai:PAE3418 putative mRNA 3-end processing factor.
   
 0.840
Cmaq_1989
PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; KEGG: pis:Pisl_0558 beta-lactamase domain protein.
   
 0.840
Cmaq_1741
PFAM: metallophosphoesterase; SMART: serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase; KEGG: pai:PAE2004 serine/threonine specific protein phosphatase.
  
  
  0.787
Cmaq_0348
TIGRFAM: tRNA intron endonuclease; PFAM: tRNA intron endonuclease, catalytic-like; KEGG: pis:Pisl_0893 tRNA intron endonuclease.
  
 
 0.750
Cmaq_1147
PFAM: zinc finger RanBP2-type; Ribosomal protein L40e; KEGG: tpe:Tpen_0296 ribosomal protein L40e; Belongs to the eukaryotic ribosomal protein eL40 family.
     
  0.744
Cmaq_1747
PFAM: tRNA intron endonuclease, catalytic-like; KEGG: mja:MJ1424 tRNA splicing endonuclease.
    
 0.716
tmk
dTMP kinase; PFAM: thymidylate kinase; KEGG: pcl:Pcal_0126 dTMP kinase.
       0.702
carS
Protein of unknown function DUF46; Catalyzes the formation of CDP-2,3-bis-(O-geranylgeranyl)-sn- glycerol (CDP-archaeol) from 2,3-bis-(O-geranylgeranyl)-sn-glycerol 1- phosphate (DGGGP) and CTP. This reaction is the third ether-bond- formation step in the biosynthesis of archaeal membrane lipids.
       0.702
Cmaq_0422
TIGRFAM: UbiD family decarboxylase; PFAM: Carboxylyase-related protein; KEGG: pai:PAE2232 hypothetical protein.
       0.700
Cmaq_0991
PFAM: protein of unknown function DUF521; KEGG: pai:PAE2233 hypothetical protein.
       0.695
Your Current Organism:
Caldivirga maquilingensis
NCBI taxonomy Id: 397948
Other names: C. maquilingensis IC-167, Caldivirga maquilingensis DSM 13496, Caldivirga maquilingensis IC-167, Caldivirga maquilingensis JCM 10307, Caldivirga maquilingensis str. IC-167, Caldivirga maquilingensis strain IC-167
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.