STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Cmaq_0085PFAM: GCN5-related N-acetyltransferase; KEGG: cpf:CPF_1025 acetyltransferase, GNAT family. (388 aa)    
Predicted Functional Partners:
Cmaq_0084
PFAM: major facilitator superfamily MFS_1; KEGG: sto:ST1709 hypothetical multidrug resistance protein.
       0.709
Cmaq_0086
KEGG: sto:ST2626 hypothetical thermopsin.
       0.625
Cmaq_0087
KEGG: pis:Pisl_0353 hypothetical protein.
       0.547
Cmaq_0088
Hypothetical protein.
       0.547
Cmaq_0090
PFAM: glycoside hydrolase 15-related; KEGG: mja:MJ1610 glucoamylase.
 
     0.430
Cmaq_0089
PFAM: Radical SAM domain protein; KEGG: pai:PAE2284 molybdenum cofactor biosynthesis protein (MoaA).
       0.427
Your Current Organism:
Caldivirga maquilingensis
NCBI taxonomy Id: 397948
Other names: C. maquilingensis IC-167, Caldivirga maquilingensis DSM 13496, Caldivirga maquilingensis IC-167, Caldivirga maquilingensis JCM 10307, Caldivirga maquilingensis str. IC-167, Caldivirga maquilingensis strain IC-167
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