Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Cmaq_0152PFAM: transcriptional regulator TrmB; KEGG: pai:PAE2282 hypothetical protein. (249 aa)    
Predicted Functional Partners:
Cmaq_0450
Membrane protein-like protein; KEGG: pai:PAE0653 hypothetical protein.
  
     0.568
Cmaq_1188
PFAM: transcriptional regulator TrmB; KEGG: sai:Saci_1161 HTH domain protein.
  
   
 0.516
spt4
DNA-directed RNA polymerase subunit E, RpoE2; Stimulates transcription elongation; Belongs to the archaeal Spt4 family.
  
     0.484
rps27e
PFAM: Ribosomal protein S27E; KEGG: pis:Pisl_0434 ribosomal protein S27E.
  
     0.472
Cmaq_1981
PFAM: Protein of unknown function DUF655; KEGG: pis:Pisl_0580 putative nucleotide binding protein.
  
     0.469
Cmaq_1880
PFAM: protein of unknown function DUF343; KEGG: pai:PAE0284 hypothetical protein.
  
     0.462
priL
DNA primase, large subunit; Regulatory subunit of DNA primase, an RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. Stabilizes and modulates the activity of the small subunit, increasing the rate of DNA synthesis, and conferring RNA synthesis capability. The DNA polymerase activity may enable DNA primase to also catalyze primer extension after primer synthesis. May also play a role in DNA repair.
  
     0.455
Cmaq_1953
PFAM: THUMP domain protein; KEGG: pai:PAE2935 hypothetical protein.
  
     0.433
Cmaq_0923
Cell division control protein 6 related; Involved in regulation of DNA replication.
  
     0.420
albA
DNA-binding protein Alba; Binds double-stranded DNA tightly but without sequence specificity. It is distributed uniformly and abundantly on the chromosome, suggesting a role in chromatin architecture. However, it does not significantly compact DNA. Binds rRNA and mRNA in vivo. May play a role in maintaining the structural and functional stability of RNA, and, perhaps, ribosomes; Belongs to the histone-like Alba family.
  
   
 0.419
Your Current Organism:
Caldivirga maquilingensis
NCBI taxonomy Id: 397948
Other names: C. maquilingensis IC-167, Caldivirga maquilingensis DSM 13496, Caldivirga maquilingensis IC-167, Caldivirga maquilingensis JCM 10307, Caldivirga maquilingensis str. IC-167, Caldivirga maquilingensis strain IC-167
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