STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Cmaq_0289PFAM: protein of unknown function DUF488; KEGG: sso:SSO1867 hypothetical protein. (117 aa)    
Predicted Functional Partners:
Cmaq_0290
PFAM: nitrite and sulphite reductase 4Fe-4S region; KEGG: tth:TTC0313 ferredoxin-nitrite reductase.
       0.520
Cmaq_0286
KEGG: pai:PAE3603 nitric oxide reductase, cytochrome b subunit.
 
     0.512
Cmaq_0288
PFAM: Hemerythrin HHE cation binding domain protein; KEGG: pai:PAE2680 hypothetical protein.
       0.508
Cmaq_0287
PFAM: Bacterio-opsin activator HTH domain protein; KEGG: sso:SSO1868 hypothetical protein.
     
 0.504
Cmaq_0470
PFAM: Carboxymuconolactone decarboxylase; Cupin domain protein; Cupin 2 conserved barrel domain protein; KEGG: rfr:Rfer_2441 carboxymuconolactone decarboxylase.
       0.490
Cmaq_0291
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: pai:PAE2450 ferredoxin.
       0.402
Your Current Organism:
Caldivirga maquilingensis
NCBI taxonomy Id: 397948
Other names: C. maquilingensis IC-167, Caldivirga maquilingensis DSM 13496, Caldivirga maquilingensis IC-167, Caldivirga maquilingensis JCM 10307, Caldivirga maquilingensis str. IC-167, Caldivirga maquilingensis strain IC-167
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