STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Cmaq_0299PFAM: protein of unknown function DUF364; KEGG: sto:ST1140 hypothetical protein. (247 aa)    
Predicted Functional Partners:
Cmaq_0298
KEGG: pcl:Pcal_1101 type II secretion system protein E.
       0.529
Cmaq_0506
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: tac:Ta1051 putative sulfate transport system permease protein.
 
    0.443
Cmaq_1157
PFAM: SMC domain protein; ABC transporter related; SMART: AAA ATPase; KEGG: tko:TK0708 ABC-type iron(III)-siderophore transport system, ATPase component.
 
    0.437
Cmaq_1156
PFAM: transport system permease protein; KEGG: sso:SSO0486 Iron (III) ABC transporter, permease protein.
 
    0.405
Your Current Organism:
Caldivirga maquilingensis
NCBI taxonomy Id: 397948
Other names: C. maquilingensis IC-167, Caldivirga maquilingensis DSM 13496, Caldivirga maquilingensis IC-167, Caldivirga maquilingensis JCM 10307, Caldivirga maquilingensis str. IC-167, Caldivirga maquilingensis strain IC-167
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