STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Cmaq_0381PFAM: Protein of unknown function DUF1288; KEGG: tpe:Tpen_0496 protein of unknown function DUF1288. (172 aa)    
Predicted Functional Partners:
Cmaq_0382
PFAM: MCM family protein; ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: pai:PAE0901 DNA replication licensing factor (mcm); Belongs to the MCM family.
     
 0.889
Cmaq_0547
KEGG: pis:Pisl_0436 hypothetical protein.
   
 
 0.880
Cmaq_0379
KEGG: pis:Pisl_1141 hypothetical protein.
       0.565
Cmaq_0380
SMART: AAA ATPase; KEGG: pai:PAE0883 hypothetical protein.
       0.565
hel308
DEAD/DEAH box helicase domain protein; DNA-dependent ATPase and 3'-5' DNA helicase that may be involved in repair of stalled replication forks.
       0.509
Cmaq_0977
PFAM: glycosyl transferase family 4; KEGG: pis:Pisl_0784 glycosyl transferase, family 4.
       0.477
rfcL
AAA ATPase central domain protein; Part of the RFC clamp loader complex which loads the PCNA sliding clamp onto DNA; Belongs to the activator 1 small subunits family. RfcL subfamily.
       0.468
Cmaq_1112
TIGRFAM: phosphodiesterase, MJ0936 family; PFAM: metallophosphoesterase; KEGG: mja:MJ0623 hypothetical protein.
       0.462
adkA
KEGG: pis:Pisl_1687 adenylate kinase; Belongs to the archaeal adenylate kinase family.
       0.451
Your Current Organism:
Caldivirga maquilingensis
NCBI taxonomy Id: 397948
Other names: C. maquilingensis IC-167, Caldivirga maquilingensis DSM 13496, Caldivirga maquilingensis IC-167, Caldivirga maquilingensis JCM 10307, Caldivirga maquilingensis str. IC-167, Caldivirga maquilingensis strain IC-167
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