STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Cmaq_0411PFAM: transcriptional regulator PadR family protein; KEGG: sso:SSO0049 hypothetical protein. (144 aa)    
Predicted Functional Partners:
Cmaq_1968
PFAM: major facilitator superfamily MFS_1; KEGG: sso:SSO3129 transporter.
 
     0.520
Cmaq_0412
TIGRFAM: 3-hydroxy-3-methylglutaryl Coenzyme A reductase; PFAM: hydroxymethylglutaryl-coenzyme A reductase; KEGG: pai:PAE2182 3-hydroxy-3-methylglutaryl-coenzyme A reductase (HMG-CoA reductase); Belongs to the HMG-CoA reductase family.
       0.498
Cmaq_0363
PFAM: ABC-2 type transporter; KEGG: sso:SSO2135 Membrane conserved hypothetical protein.
       0.495
Cmaq_0364
TIGRFAM: daunorubicin resistance ABC transporter ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sso:SSO2137 ABC transporter, ATP binding protein.
  
    0.489
Cmaq_1887
DNA-(apurinic or apyrimidinic site) lyase; PFAM: helix-hairpin-helix motif; HhH-GPD family protein; SMART: iron-sulfur cluster loop; KEGG: pis:Pisl_1140 HhH-GPD family protein.
       0.430
Cmaq_0385
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sso:SSO2600 ABC transporter, ATP binding protein.
  
    0.415
Cmaq_0737
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sai:Saci_1536 ABC transporter.
  
    0.415
Cmaq_0763
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sai:Saci_1799 ABC transporter.
  
    0.415
Cmaq_1210
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pai:PAE0315 ABC-2 type transport system ATP-binding protein.
  
    0.415
Cmaq_1559
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sai:Saci_1699 ABC transporter, ATP binding protein.
  
    0.415
Your Current Organism:
Caldivirga maquilingensis
NCBI taxonomy Id: 397948
Other names: C. maquilingensis IC-167, Caldivirga maquilingensis DSM 13496, Caldivirga maquilingensis IC-167, Caldivirga maquilingensis JCM 10307, Caldivirga maquilingensis str. IC-167, Caldivirga maquilingensis strain IC-167
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