STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Cmaq_0422TIGRFAM: UbiD family decarboxylase; PFAM: Carboxylyase-related protein; KEGG: pai:PAE2232 hypothetical protein. (440 aa)    
Predicted Functional Partners:
ubiX
3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3-polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN; Belongs to the UbiX/PAD1 family.
 
 
 0.991
Cmaq_1001
PFAM: aspartate/glutamate/uridylate kinase; KEGG: pho:PH1623 hypothetical protein.
    
  0.905
Cmaq_1865
PFAM: protein of unknown function DUF126; KEGG: pis:Pisl_0854 protein of unknown function DUF126.
 
     0.789
Cmaq_0991
PFAM: protein of unknown function DUF521; KEGG: pai:PAE2233 hypothetical protein.
 
     0.784
Cmaq_0041
KEGG: pis:Pisl_0849 hypothetical protein.
       0.700
Cmaq_0423
Hypothetical protein; KEGG: pis:Pisl_1404 type II secretion system protein.
       0.590
tmk
dTMP kinase; PFAM: thymidylate kinase; KEGG: pcl:Pcal_0126 dTMP kinase.
       0.522
Cmaq_0421
PFAM: coenzyme A transferase; KEGG: pis:Pisl_0263 coenzyme A transferase.
       0.456
Cmaq_0424
PFAM: type II secretion system protein E; KEGG: pis:Pisl_1403 type II secretion system protein E.
       0.431
Cmaq_0425
PFAM: type II secretion system protein; KEGG: pai:PAE2779 hypothetical protein.
       0.431
Your Current Organism:
Caldivirga maquilingensis
NCBI taxonomy Id: 397948
Other names: C. maquilingensis IC-167, Caldivirga maquilingensis DSM 13496, Caldivirga maquilingensis IC-167, Caldivirga maquilingensis JCM 10307, Caldivirga maquilingensis str. IC-167, Caldivirga maquilingensis strain IC-167
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